IL_8QOI_020

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_020 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2593

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8QOI|1|L5|G|443
8QOI|1|L5|G|444
8QOI|1|L5|U|445
*
8QOI|1|L5|A|1303
8QOI|1|L5|C|1304

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a