IL_8QOI_025

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8QOI|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|A|466
8QOI|1|L5|U|467
8QOI|1|L5|U|468
8QOI|1|L5|C|469
8QOI|1|L5|A|470
8QOI|1|L5|A|471
8QOI|1|L5|C|472
*
8QOI|1|L5|G|682
8QOI|1|L5|C|683
8QOI|1|L5|G|684
8QOI|1|L5|C|685
8QOI|1|L5|A|686
8QOI|1|L5|U|687
8QOI|1|L5|U|688
8QOI|1|L5|U|689

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28