IL_8QOI_046

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_046 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.1584

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8QOI|1|L5|G|1094
8QOI|1|L5|A|1095
8QOI|1|L5|C|1096
*
8QOI|1|L5|G|1199
8QOI|1|L5|G|1200
8QOI|1|L5|U|1201

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21