IL_8QOI_071
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GCGAA(PSU)G*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8QOI|1|L5|G|1741
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_071 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2565
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|L5|G|1739
8QOI|1|L5|C|1740
8QOI|1|L5|G|1741
8QOI|1|L5|A|1742
8QOI|1|L5|A|1743
8QOI|1|L5|PSU|1744
8QOI|1|L5|G|1745
*
8QOI|1|L5|C|1785
8QOI|1|L5|A|1786
8QOI|1|L5|A|1787
8QOI|1|L5|A|1788
8QOI|1|L5|C|1789
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
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