IL_8QOI_072

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUUAGAG*C(PSU)A(PSU)(PSU)CUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|1745
8QOI|1|L5|A|1746
8QOI|1|L5|U|1747
8QOI|1|L5|U|1748
8QOI|1|L5|A|1749
8QOI|1|L5|G|1750
8QOI|1|L5|A|1751
8QOI|1|L5|G|1752
*
8QOI|1|L5|C|1778
8QOI|1|L5|PSU|1779
8QOI|1|L5|A|1780
8QOI|1|L5|PSU|1781
8QOI|1|L5|PSU|1782
8QOI|1|L5|C|1783
8QOI|1|L5|U|1784
8QOI|1|L5|C|1785

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like