IL_8QOI_084

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UAUAGACAG*CGAA

Length

13 nucleotides

Bulged bases

8QOI|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|U|1957
8QOI|1|L5|A|1958
8QOI|1|L5|U|1959
8QOI|1|L5|A|1960
8QOI|1|L5|G|1961
8QOI|1|L5|A|1962
8QOI|1|L5|C|1963
8QOI|1|L5|A|1964
8QOI|1|L5|G|1965
*
8QOI|1|L5|C|2023
8QOI|1|L5|G|2024
8QOI|1|L5|A|2025
8QOI|1|L5|A|2026

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40