IL_8QOI_090
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GG(A2M)G*CU(OMC)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_090 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.2617
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8QOI|1|L5|G|2399
8QOI|1|L5|G|2400
8QOI|1|L5|A2M|2401
8QOI|1|L5|G|2402
*
8QOI|1|L5|C|2802
8QOI|1|L5|U|2803
8QOI|1|L5|OMC|2804
8QOI|1|L5|C|2805
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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