IL_8QOI_117

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8QOI|1|L5|A|3663, 8QOI|1|L5|U|3679, 8QOI|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_117 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0695

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8QOI|1|L5|C|3660
8QOI|1|L5|G|3661
8QOI|1|L5|A|3662
8QOI|1|L5|A|3663
8QOI|1|L5|G|3664
8QOI|1|L5|G|3665
*
8QOI|1|L5|U|3677
8QOI|1|L5|G|3678
8QOI|1|L5|U|3679
8QOI|1|L5|U|3680
8QOI|1|L5|G|3681
8QOI|1|L5|A|3682
8QOI|1|L5|C|3683
8QOI|1|L5|G|3684

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA