IL_8QOI_142
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- U(PSU)GA(PSU)U*AA(PSU)ACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_142 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3187
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QOI|1|L5|U|4295
8QOI|1|L5|PSU|4296
8QOI|1|L5|G|4297
8QOI|1|L5|A|4298
8QOI|1|L5|PSU|4299
8QOI|1|L5|U|4300
*
8QOI|1|L5|A|4310
8QOI|1|L5|A|4311
8QOI|1|L5|PSU|4312
8QOI|1|L5|A|4313
8QOI|1|L5|C|4314
8QOI|1|L5|A|4315
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
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