IL_8QOI_158

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

G(PSU)U*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_158 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1785

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8QOI|1|L5|G|4578
8QOI|1|L5|PSU|4579
8QOI|1|L5|U|4580
*
8QOI|1|L5|A|4723
8QOI|1|L5|A|4724
8QOI|1|L5|C|4725

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3