IL_8QOI_166

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8QOI|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_166 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2336

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8QOI|1|L5|G|4680
8QOI|1|L5|A|4681
8QOI|1|L5|U|4682
8QOI|1|L5|U|4683
8QOI|1|L5|A|4684
8QOI|1|L5|U|4685
*
8QOI|1|L5|A|4705
8QOI|1|L5|G|4706
8QOI|1|L5|A|4707
8QOI|1|L5|A|4708
8QOI|1|L5|U|4709
8QOI|1|L5|C|4710

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40