IL_8QOI_188

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8QOI|1|L7|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_188 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.0695

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8QOI|1|L7|G|82
8QOI|1|L7|A|83
8QOI|1|L7|U|84
8QOI|1|L7|G|85
*
8QOI|1|L7|C|92
8QOI|1|L7|G|93
8QOI|1|L7|C|94

Current chains

Chain L7

5S rRNA (120-MER)

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LI

60S ribosomal protein L10-like

Chain LS

60S ribosomal protein L18a