IL_8QOI_197

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAG*C(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_197 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1334

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8QOI|1|S2|C|106
8QOI|1|S2|A|107
8QOI|1|S2|G|108
*
8QOI|1|S2|C|353
8QOI|1|S2|OMU|354
8QOI|1|S2|G|355

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11