IL_8QOI_240

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8QOI|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_240 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.248

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8QOI|1|S2|G|925
8QOI|1|S2|A|926
8QOI|1|S2|C|927
*
8QOI|1|S2|G|1014
8QOI|1|S2|U|1015
8QOI|1|S2|U|1016
8QOI|1|S2|U|1017

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27