IL_8QOI_282
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_282 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.0572
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8QOI|1|S2|C|1717
8QOI|1|S2|G|1718
8QOI|1|S2|A|1719
8QOI|1|S2|U|1720
*
8QOI|1|S2|A|1813
8QOI|1|S2|G|1814
8QOI|1|S2|A|1815
8QOI|1|S2|G|1816
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LV
- 60S ribosomal protein L23
- Chain Ln
- 60S ribosomal protein L41
Coloring options: