IL_8QOI_296
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8QOI|1|L5|A|1650, 8QOI|1|L5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_296 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0584
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QOI|1|L5|OMG|1522
8QOI|1|L5|A|1523
8QOI|1|L5|A2M|1524
8QOI|1|L5|A|1525
8QOI|1|L5|G|1526
*
8QOI|1|L5|C|1648
8QOI|1|L5|U|1649
8QOI|1|L5|A|1650
8QOI|1|L5|G|1651
8QOI|1|L5|U|1652
8QOI|1|L5|A|1653
8QOI|1|L5|G|1654
8QOI|1|L5|C|1655
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lj
- 60S ribosomal protein L37
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