IL_8QOI_318

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

8QOI|1|L5|G|4522, 8QOI|1|L5|A2M|4523

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOI_318 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3444

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8QOI|1|L5|OMC|4456
8QOI|1|L5|PSU|4457
8QOI|1|L5|C|4458
*
8QOI|1|L5|G|4520
8QOI|1|L5|PSU|4521
8QOI|1|L5|G|4522
8QOI|1|L5|A2M|4523
8QOI|1|L5|G|4524

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23