IL_8QOI_340
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GC(OMC)*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_340 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1076
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8QOI|1|S2|G|1270
8QOI|1|S2|C|1271
8QOI|1|S2|OMC|1272
*
8QOI|1|S2|G|1510
8QOI|1|S2|U|1511
8QOI|1|S2|C|1512
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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