IL_8QPP_057

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_057 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1713

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8QPP|1|A|C|1312
8QPP|1|A|G|1313
8QPP|1|A|G|1314
8QPP|1|A|A|1315
8QPP|1|A|U|1316
8QPP|1|A|C|1317
*
8QPP|1|A|G|1338
8QPP|1|A|U|1339
8QPP|1|A|G|1340
8QPP|1|A|A|1341
8QPP|1|A|A|1342
8QPP|1|A|G|1343

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain M

30S ribosomal protein S13