IL_8QPP_085

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_085 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1348

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8QPP|1|X|U|650
8QPP|1|X|U|651
8QPP|1|X|A|652
8QPP|1|X|A|653
8QPP|1|X|G|654
*
8QPP|1|X|C|664
8QPP|1|X|G|665
8QPP|1|X|G|666
8QPP|1|X|A|667
8QPP|1|X|G|668

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15