IL_8QPP_087

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8QPP|1|X|G|848, 8QPP|1|X|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_087 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1106

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8QPP|1|X|G|721
8QPP|1|X|A|722
8QPP|1|X|A|723
8QPP|1|X|A|724
8QPP|1|X|C|725
*
8QPP|1|X|G|846
8QPP|1|X|A|847
8QPP|1|X|G|848
8QPP|1|X|A|849
8QPP|1|X|U|850
8QPP|1|X|A|851
8QPP|1|X|G|852
8QPP|1|X|C|853

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L15