IL_8QPP_106

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_106 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1118

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8QPP|1|X|U|1050
8QPP|1|X|C|1051
8QPP|1|X|C|1052
8QPP|1|X|C|1053
8QPP|1|X|A|1054
8QPP|1|X|A|1055
8QPP|1|X|A|1056
8QPP|1|X|G|1057
*
8QPP|1|X|C|1196
8QPP|1|X|A|1197

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL13

Chain n

Large ribosomal subunit protein bL20