IL_8QPP_115

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8QPP|1|X|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_115 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1198

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8QPP|1|X|C|1248
8QPP|1|X|U|1249
8QPP|1|X|G|1250
8QPP|1|X|U|1251
8QPP|1|X|G|1252
8QPP|1|X|A|1253
8QPP|1|X|A|1254
8QPP|1|X|G|1255
*
8QPP|1|X|U|1274
8QPP|1|X|G|1275
8QPP|1|X|G|1276
8QPP|1|X|A|1277
8QPP|1|X|G|1278

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain n

Large ribosomal subunit protein bL20