IL_8QPP_134

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_134 not in the Motif Atlas

Homologous match to IL_4WF9_062

Geometric discrepancy: 0.151

The information below is about IL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8QPP|1|X|G|1696
8QPP|1|X|A|1697
8QPP|1|X|G|1698
8QPP|1|X|A|1699
8QPP|1|X|A|1700
8QPP|1|X|C|1701
*
8QPP|1|X|G|2033
8QPP|1|X|A|2034
8QPP|1|X|C|2035

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain k

Large ribosomal subunit protein bL17