IL_8QPP_141

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

8QPP|1|X|G|1830, 8QPP|1|X|A|1845, 8QPP|1|X|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_141 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1487

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8QPP|1|X|U|1827
8QPP|1|X|G|1828
8QPP|1|X|C|1829
8QPP|1|X|G|1830
8QPP|1|X|A|1831
8QPP|1|X|A|1832
8QPP|1|X|G|1833
*
8QPP|1|X|C|1842
8QPP|1|X|G|1843
8QPP|1|X|A|1844
8QPP|1|X|A|1845
8QPP|1|X|G|1846
8QPP|1|X|U|1847
8QPP|1|X|A|1848
8QPP|1|X|U|1849
8QPP|1|X|A|1850

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Large ribosomal subunit protein uL2