IL_8QPP_149

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

8QPP|1|X|A|1967, 8QPP|1|X|U|1973, 8QPP|1|X|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_149 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1788

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

8QPP|1|X|C|1963
8QPP|1|X|G|1964
8QPP|1|X|A|1965
8QPP|1|X|A|1966
8QPP|1|X|A|1967
8QPP|1|X|U|1968
8QPP|1|X|U|1969
8QPP|1|X|C|1970
8QPP|1|X|C|1971
8QPP|1|X|U|1972
8QPP|1|X|U|1973
8QPP|1|X|G|1974
*
8QPP|1|X|C|1990
8QPP|1|X|C|1991
8QPP|1|X|C|1992
8QPP|1|X|G|1993

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Large ribosomal subunit protein uL2