IL_8QPP_153

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8QPP|1|X|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QPP_153 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1526

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8QPP|1|X|G|2099
8QPP|1|X|A|2100
*
8QPP|1|X|U|2467
8QPP|1|X|A|2468
8QPP|1|X|C|2469
8QPP|1|X|C|2470

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain U

Transfer RNA; tRNA

Chain Z

Large ribosomal subunit protein uL2