IL_8QRK_035

3D structure

PDB id

8QRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

6.69 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRK_035 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8QRK|1|A|A|1266
8QRK|1|A|U|1267
8QRK|1|A|C|1268
*
8QRK|1|A|G|1323
8QRK|1|A|U|1324
8QRK|1|A|U|1325

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain C

28S ribosomal protein S24, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial