IL_8QRK_038

3D structure

PDB id

8QRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

6.69 Å

Loop

Sequence

CGAUAG*UCGAAG

Length

12 nucleotides

Bulged bases

8QRK|1|A|U|1391

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRK|1|A|C|1388
8QRK|1|A|G|1389
8QRK|1|A|A|1390
8QRK|1|A|U|1391
8QRK|1|A|A|1392
8QRK|1|A|G|1393
*
8QRK|1|A|U|1413
8QRK|1|A|C|1414
8QRK|1|A|G|1415
8QRK|1|A|A|1416
8QRK|1|A|A|1417
8QRK|1|A|G|1418

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain X

28S ribosomal protein S29, mitochondrial