IL_8QRL_016
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8QRL|1|A|A|938
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRL_016 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.0946
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
8QRL|1|A|C|935
8QRL|1|A|G|936
8QRL|1|A|U|937
8QRL|1|A|A|938
8QRL|1|A|A|939
8QRL|1|A|A|940
8QRL|1|A|G|941
*
8QRL|1|A|C|1133
8QRL|1|A|G|1134
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: