IL_8QRL_023
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AAACU*ACUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRL_023 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.1835
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8QRL|1|A|A|1067
8QRL|1|A|A|1068
8QRL|1|A|A|1069
8QRL|1|A|C|1070
8QRL|1|A|U|1071
*
8QRL|1|A|A|1087
8QRL|1|A|C|1088
8QRL|1|A|U|1089
8QRL|1|A|A|1090
8QRL|1|A|U|1091
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain I
- 28S ribosomal protein S11, mitochondrial
- Chain Q
- 28S ribosomal protein S21, mitochondrial
Coloring options: