IL_8QRL_038

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGAUAG*UCGAAG

Length

12 nucleotides

Bulged bases

8QRL|1|A|U|1391

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRL|1|A|C|1388
8QRL|1|A|G|1389
8QRL|1|A|A|1390
8QRL|1|A|U|1391
8QRL|1|A|A|1392
8QRL|1|A|G|1393
*
8QRL|1|A|U|1413
8QRL|1|A|C|1414
8QRL|1|A|G|1415
8QRL|1|A|A|1416
8QRL|1|A|A|1417
8QRL|1|A|G|1418

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain X

28S ribosomal protein S29, mitochondrial