IL_8QRL_040

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

G(B8T)C(5MC)G*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRL|1|A|G|1485
8QRL|1|A|B8T|1486
8QRL|1|A|C|1487
8QRL|1|A|5MC|1488
8QRL|1|A|G|1489
*
8QRL|1|A|C|1561
8QRL|1|A|G|1562
8QRL|1|A|U|1563
8QRL|1|A|A|1564
8QRL|1|A|A|1565
8QRL|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

12S rRNA N4-methylcytidine (m4C) methyltransferase

Chain J

28S ribosomal protein S12, mitochondrial