IL_8QRL_042

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

8QRL|1|A|A|1492

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QRL|1|A|C|1491
8QRL|1|A|A|1492
8QRL|1|A|C|1493
8QRL|1|A|C|1494
8QRL|1|A|C|1495
*
8QRL|1|A|G|1554
8QRL|1|A|A|1555
8QRL|1|A|C|1556
8QRL|1|A|A|1557
8QRL|1|A|A|1558
8QRL|1|A|G|1559

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

12S rRNA N4-methylcytidine (m4C) methyltransferase

Chain J

28S ribosomal protein S12, mitochondrial