IL_8QRL_045

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

8QRL|1|A|C|1539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRL_045 not in the Motif Atlas

Geometric match to IL_7A0S_010

Geometric discrepancy: 0.3627

The information below is about IL_7A0S_010

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8QRL|1|A|U|1510
8QRL|1|A|C|1511
*
8QRL|1|A|G|1538
8QRL|1|A|C|1539
8QRL|1|A|A|1540

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain 3

Aurora kinase A-interacting protein