IL_8QRM_012

3D structure

PDB id

8QRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRM_012 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.109

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8QRM|1|A|G|834
8QRM|1|A|C|835
8QRM|1|A|A|836
8QRM|1|A|A|837
8QRM|1|A|U|838
*
8QRM|1|A|A|852
8QRM|1|A|C|853

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain M

28S ribosomal protein S16, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial