IL_8QRM_036
3D structure
- PDB id
- 8QRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRM_036 not in the Motif Atlas
- Geometric match to IL_1SA9_002
- Geometric discrepancy: 0.163
- The information below is about IL_1SA9_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8QRM|1|A|C|1274
8QRM|1|A|A|1275
8QRM|1|A|A|1276
8QRM|1|A|A|1277
*
8QRM|1|A|U|1298
8QRM|1|A|A|1299
8QRM|1|A|A|1300
8QRM|1|A|G|1301
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 1
- 28S ribosomal protein S35, mitochondrial
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: