IL_8QRM_049
3D structure
- PDB id
- 8QRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CAUAUC*GCCCUG
- Length
- 12 nucleotides
- Bulged bases
- 8QRM|1|A|A|1188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRM_049 not in the Motif Atlas
- Homologous match to IL_6CZR_149
- Geometric discrepancy: 0.5958
- The information below is about IL_6CZR_149
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93211.1
- Basepair signature
- cWW-cWS-cWW-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8QRM|1|A|C|1185
8QRM|1|A|A|1186
8QRM|1|A|U|1187
8QRM|1|A|A|1188
8QRM|1|A|U|1189
8QRM|1|A|C|1190
*
8QRM|1|A|G|1464
8QRM|1|A|C|1465
8QRM|1|A|C|1466
8QRM|1|A|C|1467
8QRM|1|A|U|1468
8QRM|1|A|G|1469
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
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