IL_8QRN_031

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRN_031 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.2764

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8QRN|1|A|U|1208
8QRN|1|A|C|1209
*
8QRN|1|A|G|1355
8QRN|1|A|A|1356
8QRN|1|A|A|1357

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

fMet-tRNAMet