IL_8QRN_034
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 8QRN|1|A|U|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRN_034 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1387
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QRN|1|A|U|1257
8QRN|1|A|A|1258
8QRN|1|A|U|1259
8QRN|1|A|A|1260
8QRN|1|A|C|1261
*
8QRN|1|A|G|1334
8QRN|1|A|U|1335
8QRN|1|A|G|1336
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain H
- 28S ribosomal protein S10, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
- Chain Z
- 28S ribosomal protein S33, mitochondrial
Coloring options: