IL_8QRN_045

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*UAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRN_045 not in the Motif Atlas

Geometric match to IL_4PDQ_003

Geometric discrepancy: 0.2493

The information below is about IL_4PDQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41344.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8QRN|1|A|C|1500
8QRN|1|A|A|1501
8QRN|1|A|A|1502
8QRN|1|A|G|1503
*
8QRN|1|A|U|1547
8QRN|1|A|A|1548
8QRN|1|A|G|1549

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein