IL_8QSJ_044

3D structure

PDB id

8QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QSJ_044 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.0785

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8QSJ|1|A|U|3115
8QSJ|1|A|C|3116
8QSJ|1|A|C|3117
*
8QSJ|1|A|G|3139
8QSJ|1|A|A|3140
8QSJ|1|A|A|3141

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1