IL_8QU1_007

3D structure

PDB id

8QU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU1_007 not in the Motif Atlas

Homologous match to IL_7RQB_017

Geometric discrepancy: 0.1451

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

8QU1|1|A|C|1904
8QU1|1|A|C|1905
8QU1|1|A|G|1906
*
8QU1|1|A|C|2016
8QU1|1|A|U|2017
8QU1|1|A|G|2018

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial