IL_8QU1_023

3D structure

PDB id

8QU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

8QU1|1|A|U|2731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU1_023 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.1121

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8QU1|1|A|A|2730
8QU1|1|A|U|2731
8QU1|1|A|G|2732
*
8QU1|1|A|C|2929
8QU1|1|A|U|2930

Current chains

Chain A

16S ribosomal RNA

Nearby chains