IL_8QU5_016

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8QU5|1|A|A|2198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_016 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.2218

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QU5|1|A|G|2197
8QU5|1|A|A|2198
8QU5|1|A|A|2199
8QU5|1|A|A|2200
*
8QU5|1|A|U|2211
8QU5|1|A|C|2212

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial