IL_8QU5_023

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

ACGAGAC*GUAU

Length

11 nucleotides

Bulged bases

8QU5|1|A|U|3100

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QU5|1|A|A|2717
8QU5|1|A|C|2718
8QU5|1|A|G|2719
8QU5|1|A|A|2723
8QU5|1|A|G|2724
8QU5|1|A|A|2725
8QU5|1|A|C|2726
*
8QU5|1|A|G|2934
8QU5|1|A|U|3100
8QU5|1|A|A|3101
8QU5|1|A|U|3102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial