IL_8QU5_025

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8QU5|1|A|A|2926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_025 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.231

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8QU5|1|A|G|2733
8QU5|1|A|A|2734
*
8QU5|1|A|U|2925
8QU5|1|A|A|2926
8QU5|1|A|C|2927
8QU5|1|A|C|2928

Current chains

Chain A

16S ribosomal RNA

Nearby chains