IL_8QYX_002

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8QYX|1|A2|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_002 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.0849

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8QYX|1|A2|A|12
8QYX|1|A2|U|13
8QYX|1|A2|C|14
*
8QYX|1|C2|G|143
8QYX|1|C2|U|144

Current chains

Chain A2

28S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain H1

60S ribosomal protein L15

Chain R1

60S ribosomal protein L23a