IL_8QYX_003
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_003 not in the Motif Atlas
- Geometric match to IL_1Z7F_006
- Geometric discrepancy: 0.1063
- The information below is about IL_1Z7F_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8QYX|1|A2|G|16
8QYX|1|A2|A|17
8QYX|1|A2|C|18
*
8QYX|1|C2|G|139
8QYX|1|C2|C|140
8QYX|1|C2|C|141
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain H1
- 60S ribosomal protein L15
- Chain R1
- 60S ribosomal protein L23a
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
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