3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
AU*ACAUGU
Length
8 nucleotides
Bulged bases
8QYX|1|A2|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_009 not in the Motif Atlas
Homologous match to IL_8C3A_007
Geometric discrepancy: 0.1372
The information below is about IL_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_19724.3
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8QYX|1|A2|A|121
8QYX|1|A2|U|122
*
8QYX|1|A2|A|147
8QYX|1|A2|C|148
8QYX|1|A2|A|149
8QYX|1|A2|U|150
8QYX|1|A2|G|151
8QYX|1|A2|U|152

Current chains

Chain A2
28S rRNA

Nearby chains

Chain B1
60S ribosomal protein L7a
Chain C2
5.8S ribosomal RNA; 5.8S rRNA
Chain H1
60S ribosomal protein L15

Coloring options:


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